| ||
| 1. | ChIP-seq in steatohepatitis and normal liver tissue identifies candidate disease mechanisms related to progression to cancer
[ LINK ]
BMC MEDICAL GENETICS Tom 6 Nr 50 r. 2013, str. doi:10.1186/1755-8794-6-50 / 1-14 (Artykuł) Madhusudhan Bysani, Ola Wallerman, Susanne Bornelov, Kurt Zatloukal, Jan Komorowski, Claes Wadelius | |
| 2. | Peak Finder Metaserver - a novel application for finding peaks in ChIP-seq data
[ LINK ]
BMC BIOINFORMATICS Tom 14 r. 2013, str. DOI: 10.1186/1471-2105-14-280 / 280-280 (Artykuł) Marcin Kruczyk, Hausen Umer, Stefan Enroth, Jan Komorowski, Jan Komorowski | |
| 3. | Random Reducts: A Monte Carlo Rough Set-based Method for Feature Selection in Large Datasets
[ LINK ]
FUNDAMENTA INFORMATICAE Tom 127 Nr 1-4 r. 2013, str. DOI: 10.3233/FI-2013-909 / 273-288 (Artykuł) Marcin Kruczyk, Nicholas Baltzer, Jakub Mieczkowski, Michal Dramiński, Jacek Koronacki, Jan Komorowski, Jan Komorowski | |
| 4. | Rule-Based Models of the Interplay between Genetic and Environmental Factors in Childhood Allergy
[ LINK ]
PLOS ONE Tom 8 Nr 11 r. 2013, str. DOI: 10.1371/journal.pone.0080080 / 80080-80080 (Artykuł) Susanne Bornelov, Annika Saaf, Erik Melen, Anna Bergstrom, Behrooz Moghadam, Ville Pulkkinen, Nathalie Acevedo, Christina Pietras, Markus Ege, Charlotte Braun-Fahrlander, Josef Riedler, Gert Doekes, Michael Kabesch, Marianne von Hage, Juha Kere, Annika Scheynius, Cilla Soderhall, Goran Pershagen, Jan Komorowski | |
| 5. | The signal transducers Stat1 and Stat3 and their novel target Jmjd3 drive the expression of inflammatory genes in microglia.
[ LINK ]
JOURNAL OF MOLECULAR MEDICINE-JMM r. 2013, str. doi: 10.1007/s00109-013-1090-5 / 1-5 (Artykuł) Piotr Przanowski, Michał D±browski, Aleksandra Miklaszewska, Michał Kloss, Jakub Mieczkowski, Beata Kaza, Anna Ronowicz, Feng Hu, Arkadiusz Piotrowski, Helmut Kettenmann, Jan Komorowski, Jan Komorowski, Bozena Kamińska | |
| 6. | A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements
ALGORITHMS FOR MOLECULAR BIOLOGY Tom 7 Nr 1 r. 2012, str. 1-7 (Artykuł) Stefan Enroth, Claes Andersson, Robin Andersson, Claes Wadelius, Mats Gustafsson, Jan Komorowski | |
| 7. | Combinations of Histone Modifications Mark Exon Inclusion Levels
[ LINK ]
PLOS ONE Tom 7 Nr 1 r. 2012, str. e29911 doi: 10.1371/journal.pone.0029911 / 1-6 (Artykuł) Stefan Enroth, Susanne Bornelöv, Claes Wadelius, Jan Komorowski | |
| 8. | Gis1 and Rph1 Regulate Glycerol and Acetate Metabolism in Glucose Depleted Yeast Cells
[ LINK ]
PLOS ONE Tom 7 Nr 2 r. 2012, str. e31577; doi: 10.1371/journal.pone.0031577 / 1-19 (Artykuł) Jan Orzechowski Westholm, Susanna Tronnersjö, Niklas Nordberg, Ida Olsson, Jan Komorowski, Hans Ronne | |
| 9. | Monte Carlo feature selection and rule-based models to predict Alzheimer's disease in mild cognitive impairment
JOURNAL OF NEURAL TRANSMISSION Tom 119 Nr 7133 r. 2012, str. 821-831 (Artykuł) Marcin Kruczyk, Henrik Zetterberg, Oskar Hansson, Sindre Rolstad, Lennart Minthon, Anders Wallin, Kaj Blennow, Jan Komorowski, Mats Andersson | |
| 10. | Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa
BMC CANCER Tom 11 r. 2011, str. 1-17 (Artykuł) Stefan Enroth, Alvaro Rada-Iglesisas, Robin Andersson, Ola Wallerman, Alkwin Wanders, Lars Paehlman, Jan Komorowski, Claes Wadelius | |
| 11. | Integrative epigenomic and genomic analysis of malignant pheochromocytoma
EXPERIMENTAL AND MOLECULAR MEDICINE Tom 42 Nr 7 r. 2010, str. 484-502 (Artykuł) Johanna Sandgren, Robin Andersson, Alvaro Rada-Iglesias, Stefan Enroth, Goran Akerstrom, Jan Dumanski, Jan Komorowski, Gunnar Westin, Claes Wadelius | |
| 12. | Nitrogen depletion in the fission yeast Schizosaccharomyces pombe causes nucleosome loss in both promoters and coding regions of activated genes
GENOME RESEARCH Tom 20 Nr 3 r. 2010, str. 10.1101/gr.098558.109 / 361-371 (Artykuł) Carolina Kristell, Jakub Orzechowski Westholm, Ida Olsson, Hans Ronne, Jan Komorowski, Pernilla Bjerling | |
| 13. | A Comprehensive Analysis of the Structure-Function Relationship in Proteins Based on Local Structure Similarity
[ LINK ]
PLOS ONE Tom 4 Nr 7 r. 2009, str. e6266. doi:10.1371/journal.pone.0006266 / 1-19 (Artykuł) Torgeir Hvidsten, Astrid Laegreid, Andriy Kryshtafovych, Gunnar Andersson, Krzysztof Fidelis, Jan Komorowski | |
| 14. | A Rough Set-Based Model of HIV-1 Reverse Transcriptase Resistome
[ LINK ]
BIOINFORMATICS AND BIOLOGY INSIGHTS Tom 2009 Nr 3 r. 2009, str. 109-127 (Artykuł) Marcin Kierczak, Krzysztof Ginalski, Michał Dramiński, Jacek Koronacki, Witold Rudnicki, Jan Komorowski | |
| 15. | Differential binding and co-binding pattern of FOXA1 and FOXA3 and their relation to H3K4me3 in HepG2 cells revealed by ChIP-seq
[ LINK ]
GENOME BIOLOGY Tom 10 Nr 11 r. 2009, str. 10.1186/gb-2009-10-11-r129 / 129-145 (Artykuł) Mehdi Motallebipour, Adam Ameur, Madhu Sudhan Reddy Bysani, Kalicharan Patra, Ola Wallerman, Jonathan Mangion, Melissa Barker, Kevin McKernan, Jan Komorowski, Claes Wadelius | |
| 16. | Histone H3 lysine 27 trimethylation in adult differentiated colon associated to cancer DNA hypermethylation
EPIGENETICS Tom 1 r. 2009, str. 107-113 (Artykuł) Alvaro Rada-Iglesias, Stefan Enroth, Robin Andersson, Alkwin Wanders, Lars Pahlman, Jan Komorowski, Claes Wadelius | |
| 17. | Identification of candidate regulatory SNPs by combination of transcription-factor-binding site prediction, SNP genotyping and haploChIP
[ LINK ]
NUCLEIC ACIDS RESEARCH Tom 37 Nr 12 r. 2009, str. e85 / 1-9 (Artykuł) A. Ameur, A. Rada-Iglesias, Jan Komorowski, C. Wadelius | |
| 18. | Molecular interactions between HNF4a, FOXA2 and GABP identified at regulatory DNA elements through ChIP-sequencing
[ LINK ]
NUCLEIC ACIDS RESEARCH Tom 37 Nr 22 r. 2009, str. 7498-7508 (Artykuł) O. Wallerman, M. Motallebipour, S. Enroth, K. Patra, M. Bysani, Jan Komorowski, C. Wadelius | |
| 19. | Novel genes in cell cycle control and lipid metabolism with dynamically regulated binding sites for sterol regulatory element-binding protein 1 and RNA polymerase II in HepG2 cells detected by chromation immunoprecipitation with microarray detection
[ LINK ]
FEBS JOURNAL Tom 276 Nr 7 r. 2009, str. 10.1111/j.1742-4658.2009.06914.x / 1878-1890 (Artykuł) Mehdi Motallebipour, Stefan Enroth, Tanel Punga, Adam Ameur, Christoph Koch, Ian Dunham, Jan Komorowski, Johan Ericsson, Claes Wadelius | |
| 20. | Nucleosomes are well positioned in exons and carry characteristic histone modifications
[ LINK ]
GENOME RESEARCH Tom 19 Nr 10 r. 2009, str. 10.1101/gr.092353.109 / 1732-1741 (Artykuł) Robin Andersson, Stefan Enroth, Alvaro Rada-Iglesias, Claes Wadelius, Jan Komorowski | |
| 21. | A segmental maximum a posteriori approach to genome-wide copy number profiling
[ LINK ]
BIOINFORMATICS Tom 24 Nr 6 r. 2008, str. 751-758 (Artykuł) Robin Andersson, Carl Bruder, Arkadiusz Piotrowski, Uwe Menzel, Helena Nord, Johanna Sandgren, Torgeir Hvidsten, Teresita Diaz de Stahl, Jan Dumanski, Jan Komorowski | |
| 22. | Generalized Proteochemometric Model of Multiple Cytochrome P450 Enzymes and Their Inhibitors
[ LINK ]
JOURNAL OF CHEMICAL INFORMATION AND MODELING Tom 48 Nr 9 r. 2008, str. 1840-1850 (Artykuł) Aleksejs Kontijevskis, Jan Komorowski, Jarl Wikberg | |
| 23. | Genome-scale study of the importance of binding site context for transcription factor binding and gene regulation
[ LINK ]
BMC BIOINFORMATICS Tom 9 r. 2008, str. 484 / 1-38 (Artykuł) Jakub Orzechowski Westholm, Feifei Xu, Hans Ronne, Jan Komorowski | |
| 24. | Monte Carlo feature selection for supervised classification
[ LINK ]
BIOINFORMATICS Tom 24 Nr 1 r. 2008, str. btm486 / 110-117 (Artykuł) Michał Dramiński, Alvaro Rada-Iglesias, Stefan Enroth, Claes Wadelius, Jacek Koronacki, Jan Komorowski | |
| 25. | Whole-genome maps of USF1 and USF2 binding and histone H3 acetylation reveal new aspects of promoter structure and candidate genes for common human disorders
[ LINK ]
GENOME RESEARCH Tom 18 Nr 3 r. 2008, str. 380-392 (Artykuł) Alvaro Rada-Iglesias, Adam Ameur, Philipp Kapranov, Stefan Enroth, Jan Komorowski, Thomas Gingeras, Claes Wadelius | |