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| 1. | A structure-based model fails to probe the mechanical unfolding pathways of the titin I27 domain
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JOURNAL OF CHEMICAL PHYSICS Tom 139 r. 2013, str. 1-10 (Artykuł) Maksim Kouza, Chin-Kun Hu, Mai Suan Li, Andrzej Koliński | |
| 2. | CABS-flex: server for fast simulation of protein structure fluctuations
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NUCLEIC ACIDS RESEARCH Tom 41 r. 2013, str. 427-431 (Artykuł) M Jamróz, Andrzej Koliński, Sebastian Kmiecik | |
| 3. | CABS-fold: server for the de novo and consensus-based prediction of protein structure
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NUCLEIC ACIDS RESEARCH Tom 41 r. 2013, str. 406-411 (Artykuł) Maciej Błaszczyk, M Jamróz, Sebastian Kmiecik, Andrzej Koliński | |
| 4. | ClusCo: clustering and comparison of protein models
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BMC BIOINFORMATICS Tom 14 r. 2013, str. 62-62 (Artykuł) Michał Jamróz, Andrzej Koliński | |
| 5. | Combining Coarse-Grained Protein Models with Replica-Exchange All-Atom Molecular Dynamics
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INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES Tom 14 Nr 5 r. 2013, str. 9893-9905 (Artykuł) Jacek Wabik, Sebastian Kmiecik, Dominik Gront, Maksim Kouza, Andrzej Koliński | |
| 6. | Consistent View of Protein Fluctuations from All-Atom Molecular Dynamics and Coarse-Grained Dynamics with Knowledge-Based Force-Field
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JOURNAL OF CHEMICAL THEORY AND COMPUTATION Tom 9 Nr 1 r. 2013, str. 119-125 (Artykuł) Michał Jamróz, Modesto Orozco, Andrzej Koliński, Sebastian Kmiecik | |
| 7. | Distributions of amino acids suggest that certain residue types more effectively determine protein secondary structure
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JOURNAL OF MOLECULAR MODELING Tom 19 r. 2013, str. 4337-4348 (Artykuł) Saras Saraswathi, J. Fernández-Martínez, Andrzej Koliński, Robert Jernigan, Andrzej Kloczkowski | |
| 8. | Analysis and optimization of interactions between peptides mimicking GD2 gangloside and monoclonal antibody 14G2a
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INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE Tom 28 r. 2011, str. 47-57 (Artykuł) Irena Horwacik, Mateusz Kurciński, Małgorzata Bzowska, Aleksandra Kowalczyk, Dominik Czaplicki, Andrzej Koliński, Hanna Rokita | |
| 9. | CABS-NMR – de novo tool for rapid global fold determination from chemical shifts, residual dipolar couplings and sparse methyl-methyl NOEs
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JOURNAL OF COMPUTATIONAL CHEMISTRY Tom 32 Nr 3 r. 2011, str. 536-544 (Artykuł) Dorota Latek, Andrzej Koliński | |
| 10. | Computational study of binding of epothilone A to β-tubulin
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ACTA BIOCHIMICA POLONICA Tom 58 Nr 2 r. 2011, str. 255-260 (Artykuł) Karol Kamel, Andrzej Koliński | |
| 11. | Human telomerase model shows the role of the TEN domain in advancing the double helix for the next polymerization step
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PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA Tom 108 Nr 23 r. 2011, str. 9443-9448 (Artykuł) Kamil Steczkiewicz, Michael Zimmermann, Mateusz Kurciński, Benjamin Lewis, Drena Dobbs, Andrzej Kloczkowski, Robert Jernigan, Andrzej Koliński, Krzysztof Ginalski | |
| 12. | Multi-Body Coarse-Grained Potentials for Native Structure Recognition and Quality Assessment of Protein Models
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PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS Tom 79 Nr 6 r. 2011, str. 1923-1929 (Artykuł) P. Gniewek, Sumudu Leelananda, Andrzej Koliński, Robert Jernigan, Andrzej Kloczkowski | |
| 13. | Note: A simple picture of sub-diffusive polymer motion from stochastic simulations
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JOURNAL OF CHEMICAL PHYSICS Tom 134 r. 2011, str. 1-2 (Artykuł) P. Gniewek, Andrzej Koliński | |
| 14. | Simulation of Chaperonin Effect on Protein Folding: A Shift from Nucleation–Condensation to Framework Mechanism
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JOURNAL OF THE AMERICAN CHEMICAL SOCIETY Tom 133 Nr 26 r. 2011, str. 10283-10289 (Artykuł) Sebastian Kmiecik, Andrzej Koliński | |
| 15. | Properties of Radical Anions of Triptindanones and Indanones: Electronic Communication and Stability of Ion Pairs Containing Lithium Cations .
JOURNAL OF PHYSICAL CHEMISTRY C Tom 113 r. 2009, str. 7436-7442 (Artykuł) Jan Jaworski, A. Kosson, Sławomir Filipek, Andrzej Koliński, D Kuck | |
| 16. | AAindex: amino acid index database, progress report 2008
NUCLEIC ACIDS RESEARCH Tom 36 Nr Database-Issue r. 2008, str. 202-205 (Artykuł) Shuichi Kawashima, Piotr Pokarowski, Maria Pokarowska, Andrzej Koliński, Toshiaki Katayama, Minoru Kanehisa | |
| 17. | AAindex: Amino Acid index database, progress report 2008.
NUCLEIC ACIDS RESEARCH Tom 36 Nr D r. 2008, str. 202-205 (Artykuł) S Kawashima, P Pokarowski, M Pokarowska, Andrzej Koliński, T Katayama, M Kanehisa | |
| 18. | Contact prediction in protein modeling. Scoring, folding and refinement of coarse-grained models
BMC STRUCTURAL BIOLOGY Tom 8 Nr 36 r. 2008, str. 1-15 (Artykuł) Dorota Latek, Andrzej Koliński | |
| 19. | Fast and accurate method for predicting short-range constraints in protein models.
JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN Tom 20 r. 2008, str. 783-788 (Artykuł) Dominik Gront, Andrzej Koliński | |
| 20. | Folding pathway of the B 1 domain of protein G explored by a multiscale modeling.
BIOPHYSICAL JOURNAL Tom 94 r. 2008, str. 726-736 (Artykuł) Sebastian Kmiecik, Andrzej Koliński | |
| 21. | Predicting the structure and functional mechanism of the outer membrane transporter and signal transducer FecA.
BIOPHYSICAL JOURNAL Tom 94 r. 2008, str. 2482-2491 (Artykuł) T Sen, M Kloster, A Kloczkowski, Andrzej Koliński, J Bujnicki, R Jernigan | |
| 22. | Uncharacterized DUF1574 leptospira proteins are SGNH hydrolases
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CELL CYCLE Tom 7 Nr 4 r. 2008, str. 542-544 (Artykuł) Łukasz Kniżewski, Kamil Steczkiewicz, Krzysztof Kuchta, Lucjan Wyrwicz, Dariusz Plewczyński, Andrzej Koliński, Leszek Rychlewski, Krzysztof Ginalski | |
| 23. | Uncharacterized DUF1574 Leptospira proteins are SGNH hydrolases.
CELL CYCLE Tom 7 r. 2008, str. 542-544 (Artykuł) L Knizewski, K Steckiewicz, Krzysztof Kuchta, Lucjan Wyrwicz, Dariusz Plewczyński, Andrzej Koliński, L Rychlewski, Krzysztof Ginalski | |
| 24. | Utility library for structural bioinformatics.
BIOINFORMATICS Tom 24 r. 2008, str. 584-585 (Artykuł) Dominik Gront, Andrzej Koliński | |
| 25. | AAindex: Amino Acid index database, progress report 2008
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NUCLEIC ACIDS RESEARCH r. 2007, str. doi:10.1093 / 1-2 (Artykuł) S Kawashima, P Pokarowski, M Pokarowska, Andrzej Koliński, T Katayama, M Kanehisa | |